rs219253100 SNP Detail

Summary

• ID
  rs219253100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17094478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGAGCGA GAGCCTCACC
  GGGCGCCTGG AGGAGCTGCG GGAGCGCGAG CGCAGGTGCG AGGGCACCGA GGCCCCGGCA
  GGCTTGTTGG CAGTCTCGCT CCAGGCAGTG GGACCCTAGT CTGGAACTCT CAGGCTGGTG
  GCGGCTCCTT CCCAAAATAT CTTGCTCCCT GGTTTTATCC CAGACCAATT CTCCGCCCCC
  Y
  CTCCCCCTCC CCCGTGTAGC CTGCAGCGGA GACGAAGTCA AGCATCACGA GCCATTCGAG
  GCGAGGCATG TGAGGCGGCA CGGGAGCGTG CGGAGCGGGC TCGTGGGCTG CTGGAGGCGG
  CGGAGCAGCA CCGGCAGGAC CTGGTGCGGG CAAGAGCAAG AGGCGGCTCC CGGGGTGGCT
  AGGCTGGAGG AGGGGCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395516018	MGP_WTSI_16_17276707	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219253100					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395516018	MGP_WTSI_16_17276707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17094478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8012	CpG island 8012	within coordinates
Gm49573	predicted gene, 49573	within coordinates
Rr316836	regulatory region 316836	478 bp distal
Rr324991	regulatory region 324991	within coordinates
Rr370056	regulatory region 370056	222 bp downstream
Tmem191	transmembrane protein 191	within coordinates
Tssr137285	transcription start site region 137285	284 bp downstream
Tssr137286	transcription start site region 137286	256 bp downstream
Tssr137287	transcription start site region 137287	48 bp upstream