rs219259240 SNP Detail

Summary

• ID
  rs219259240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28426712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGGTTT TGGGGGGAGG
  AAAGTGAGGG CTCCGGGTGG TGCTATGACG TGGAACTGGA TATTGAGTAA TAAATTTGCT
  GTGGTTTGTA CCCGGTGTTG TCTGTTGCCT GGAAGTTGGG AAGCTGAGTT ACTGTGGGCA
  CAGAAAGACG GTGTGGGAGA GGCAGAAAGC AGCTGAATCC AGGAGGGCAG TGCACTTGAA
  Y
  CCTTTTCTTC CTCAGCTTCC CCTGGAGGGC TTCTAGGGGG AGGAAATGCC ATTTCTTCCT
  CAGTTCTGAG GATGGTTAAG GCTATAAGTA CCTTTCTCAT TCCTCAAACC AGAGTGTTTC
  CTATCTCTTA CCTAGCTACT TAGCAGTTCA TCATAGCTTT GTGCACATGG ACATTCAAAA
  GATAGGTTCC CCAAGACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367792804	MGP_WTSI_6_28376713	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219259240					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367792804	MGP_WTSI_6_28376713	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28426712 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	111 bp downstream
Fscn3	fascin actin-bundling protein 3	1176 bp upstream
Rr627384	regulatory region 627384	486 bp proximal
Tssr55193	transcription start site region 55193	448 bp downstream
Tssr55194	transcription start site region 55194	393 bp downstream
Tssr55195	transcription start site region 55195	359 bp downstream
Tssr55196	transcription start site region 55196	323 bp downstream
Tssr55197	transcription start site region 55197	212 bp downstream
Tssr55198	transcription start site region 55198	1169 bp upstream
Tssr55199	transcription start site region 55199	1205 bp upstream