rs219261611 SNP Detail

Summary

• ID
  rs219261611
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115570328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCGAAAGG GCTTTGTCTG TGTTTAGCAT CTCTGGGCTG
  GGGAAAGGGG GCGGGAAAGA GTCTATTTTG GGATCTGAAT TTCACCTTTT ATTTACTTGT
  K
  GGGCCTTATT TATGTTGCCA GCTGTGAGTC AGAGTGGAGG GTGTGTGTGT GTGTGGTGTG
  TGTGTGTGTG TTGGAGATTT TCTGTGTGTG AGTCTGGGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321654899	CHEV_5_115882278	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219261611					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115570328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	1307 bp distal
Msi1	musashi RNA-binding protein 1	within coordinates
Rr618244	regulatory region 618244	688 bp distal
Tssr48237	transcription start site region 48237	1933 bp downstream
Tssr48238	transcription start site region 48238	1640 bp downstream
Tssr48239	transcription start site region 48239	887 bp downstream
Tssr48240	transcription start site region 48240	251 bp downstream
Tssr48241	transcription start site region 48241	229 bp downstream