rs219262590 SNP Detail

Summary

• ID
  rs219262590
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:57955924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCGGCAGG TCACTGATGG AGGGAAACTA
  AGGCCGAGCC CAGCAGTACA ACACACCCGC GCGGCGTGTG GCACCGCGTA CTCGAGAAGT
  GGCGGCTCTC CATCTTTTCC TAGAGATCCT AAATCCTGAT TCAGTTGGGG CACGGGAAGG
  K
  GGGAGTGTCA CAGGAGGACC CCGGTCCATC TCTTCACCTC CGCCAGATTT GGGCTGGCGG
  TAGGGAGTGC AGCTCCGGGG ACTCAGGTGC TGCCCACGAG TGCATCTCCC GTACCCGGCG
  TTCCAGGGTC CCCTCGTCCC CTCCCCCAGG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136100	CHEV_4_57968796	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219262590					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57955924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	within coordinates
Gm35344	predicted gene, 35344	828 bp upstream
Gm57068	predicted gene, 57068	within coordinates
Rr398279	regulatory region 398279	384 bp upstream
Rr592847	regulatory region 592847	1834 bp distal
Rr592848	regulatory region 592848	within coordinates
Rr592849	regulatory region 592849	138 bp distal
Rr592850	regulatory region 592850	477 bp proximal
Rr592851	regulatory region 592851	503 bp proximal
Rr592852	regulatory region 592852	810 bp proximal
Rr592853	regulatory region 592853	1311 bp proximal
Tssr1183	transcription start site region 1183	387 bp downstream
Tssr1184	transcription start site region 1184	492 bp downstream
Tssr37396	transcription start site region 37396	698 bp upstream
Tssr37397	transcription start site region 37397	1000 bp upstream
Tssr41866	transcription start site region 41866	359 bp downstream
Txn1	thioredoxin 1	Intron