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rs219272073 SNP Detail
Summary
  • ID
    rs219272073
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:103223541 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTTGT CCTTTTTCTT TTCTTTCTTT
    Y
    TTTTTTTTAA ACTAATAATG GGTTG                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323160930 CHEV_9_103248672 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs219272073 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:103223541 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr198506 regulatory region 198506 541 bp distal
Rr207098 regulatory region 207098 452 bp proximal
Topbp1 topoisomerase (DNA) II binding protein 1 within coordinates
Tssr91191 transcription start site region 91191 1378 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory