rs219273847 SNP Detail

Summary

• ID
  rs219273847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148513229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGACACA AGTTTCTAAC
  CTGCATCTTG GCATGGAGAT TTTGGGGCAT AGTGGCCATG AAAAGTTTAG GCTAAACAAG
  GTAGTACACA CCTTTAATGC CAGGAGATTG AGGCAAGGAG AACCCTGACT AATATGGGGG
  TGGTGGAATG GTGGAGGAGG GGGAGGGGGA GGGGAGAGAA AGAGAGAGAG AGGGGAGGGG
  R
  AGGGGAGAGA AAGAGGGAGA GGGGGGAGGG GTGGAGGAGA GGAAGGGGAG AGGGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGATTCTATC CTCTAGAGAA CCTTGACGAA
  TACGCTCAAC TGTGTCAGTG GCCAGTCCTT TAGAATCAGA GGCATCTCTA ATCTCCCAAA
  TTCAAGGGCT ACTGAAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356077471	MGP_WTSI_2_148497045	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219273847					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356077471	MGP_WTSI_2_148497045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148513229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	1072 bp proximal
Nxt1	NTF2-related export protein 1	1306 bp upstream
Rr397374	regulatory region 397374	1078 bp upstream
Rr566945	regulatory region 566945	802 bp proximal
Rr566946	regulatory region 566946	1176 bp proximal
Rr566947	regulatory region 566947	1328 bp proximal
Tssr20647	transcription start site region 20647	1325 bp upstream