rs219274219 SNP Detail

Summary

• ID
  rs219274219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190713344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTGGGAG TTGGGATGGA
  AACCTCTATG AGGCAGGCAG GGTGGGAGCC AGGATCAGTA GAGGATCAAT GGAGGCAACC
  TGGGTTCTAA ACCTACCAGG ACAGAGCCCT GGGCATGAGA CTATGGATGG AGTCATCACT
  GAGCACAGTA ACGCCAGTCT ATGTCAGAAC ATTCTTAACG GTCCTCGGGC AACAAGCACA
  Y
  CTGGGAAAGA ATCAGGAGGG AGAAGACAAT GTGTGCCCAG GGAATCTCGT TCCTAATTAA
  AAGGAAACCC ACCTGTTTGC TCATCCCAAA CGCCCTTCTC TCCTGTCTGC AGTTCATCCT
  TAAGTCCATC TCTCTCCCTT CCACGTCCCT GGTACCCAGA CCAGAAAAGG AACTCAGGGC
  AGCACTTCTG TGGACTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320194442	CHEV_1_192805026	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219274219					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190713344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1214	CpG island 1214	1539 bp distal
Tssr15742	transcription start site region 15742	1993 bp upstream
Tssr15743	transcription start site region 15743	1969 bp upstream
Tssr15744	transcription start site region 15744	1957 bp upstream
Tssr15745	transcription start site region 15745	1915 bp upstream
Tssr15746	transcription start site region 15746	1875 bp upstream
Tssr15747	transcription start site region 15747	1845 bp upstream
Vash2	vasohibin 2	1851 bp upstream