rs219282604 SNP Detail

Summary

• ID
  rs219282604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105247068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCCTAGG TTCTGTAAGA
  AAACAGTCTG AGCAAGCCAT GGGGAACAAG CCAATAAGCA GCATCCTTCC ATGGCTCTGC
  ATCAGCTCCT GCCTCCAGGT TCCTGTCCTG TTTGAGTTCC TGTACTCACT TCCTTTGATG
  ATGAAGTTAC ATGAAAGTGT AAGCCAAATA AACCCTTTCT TCCCCAAGTT GCTTTTGGTC
  W
  TGGTGTTTCA TCACAGCAAT AGTGACCCTA ACAAATATAC TCGTTAAGAA GAGGGCATGG
  AAAGAGGTAG GAGAGGAAAC GAAGCTGTTA GGTAGGGACA TCCCAACCAG ACACACCCTC
  TGGCAAGTTG GAAGTTTTCT CTTCCTATGA GCAGTTTGGG CCAGGGCCTG GGTCTTCATG
  AACAAAAGAG TTGCTTGTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372621695	MGP_WTSI_7_112746375	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219282604					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372621695	MGP_WTSI_7_112746375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105247068 () rs orientation: forward

Symbol	Name	Function Class
Hpx	hemopexin	within coordinates
Tssr68381	transcription start site region 68381	1555 bp downstream
Tssr74066	transcription start site region 74066	1506 bp upstream
Tssr74067	transcription start site region 74067	1494 bp upstream
Tssr74068	transcription start site region 74068	1481 bp upstream
Tssr74069	transcription start site region 74069	1436 bp upstream
Tssr74070	transcription start site region 74070	954 bp downstream
Tssr74071	transcription start site region 74071	1425 bp downstream
Tssr74072	transcription start site region 74072	1435 bp downstream
Tssr74073	transcription start site region 74073	1471 bp downstream
Tssr74074	transcription start site region 74074	1492 bp downstream
Tssr74075	transcription start site region 74075	1836 bp downstream
Tssr74076	transcription start site region 74076	1855 bp downstream