rs219288297 SNP Detail

Summary

• ID
  rs219288297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77544516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCTCTA AATAGTATAC
  GTTTTTCTTC CACTATTTTA TAGAGAAGAA GAACAAAGAA AATTCTTAGG GCTTGCTCAG
  GAGATTTAGA ATTCCATTTT TAATTTCATT AGCAACCACT TAAACATGTG GTTTGGTCAA
  CACAACTGCT TAGGAAAGAC ACAATTTTAC TAGTTTTAGC TGAATTAATA ATACAAAACT
  Y
  AAATGAACCC TCTGACTCCC CAAAATATAA CTTCTCGACA AAATTGAGCC CCTACCCCCG
  CAAATACCCT ACATTTGTTA GTTGACAGAA AATAAATATA GATTTTTGTA CTAAATGTGC
  ACATATGGTT ATCTTGATTT ATGTTTCACA TTTAAAAAAA AATCATTTTG ATGACAAAGC
  GACAAAGTGG AATCCCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378138880	MGP_WTSI_9_77485041	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219288297					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378138880	MGP_WTSI_9_77485041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77544516 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	407 bp upstream
Klhl31	kelch-like 31	within coordinates
Rr683389	regulatory region 683389	724 bp distal
Rr683390	regulatory region 683390	418 bp distal
Rr683391	regulatory region 683391	231 bp distal
Rr683392	regulatory region 683392	180 bp proximal
Tssr86194	transcription start site region 86194	754 bp downstream
Tssr86195	transcription start site region 86195	706 bp downstream
Tssr86196	transcription start site region 86196	687 bp downstream
Tssr86197	transcription start site region 86197	624 bp downstream
Tssr86198	transcription start site region 86198	614 bp downstream
Tssr86199	transcription start site region 86199	599 bp downstream
Tssr86200	transcription start site region 86200	523 bp downstream
Tssr86201	transcription start site region 86201	502 bp downstream