rs219288311 SNP Detail

Summary

• ID
  rs219288311
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52395601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATGTGC ACATGTGTAC
  ATGTACACAC ACACACAAAT AATCATGCTA AATAAGATGA AATTTAGAGA GACTTCATTG
  GGAATCACAA CCAAATTAAT ACAAAAAATG CAGTATAAGT CAAGAAAAGT TTCCATTTTC
  TGCAACATTG CATATGTCAA AAATGCAAAT GATCTTCCAG ACAAATGATT AGATATTACA
  W
  CCAAATCTAA CTATGTCTGT TCCTGCTTAG TTTCCAAGAT CAGAGAGAAC ACACTAGGAG
  ACCTCCATGG TAACATGGCT GTAGACCAAA TTACTAGACA GAACACAATA GCAAGCTTGC
  TATACAAAAG GTAGACACGA AAAAATCATT TATATTACCA CATCAAAGTA ATCAGAGAAA
  AATAGAAAGA GGAAAAAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323303672	CHEV_10_52239311	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219288311					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52395601 () rs orientation: forward

Symbol	Name	Function Class
Gm47610	predicted gene, 47610	1023 bp upstream
Gm65895	predicted gene, 65895	within coordinates