rs219294718 SNP Detail

Summary

• ID
  rs219294718
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95723778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGTGTATG GGTACAGGGT CACCACTGTG GGGCAAGAAG
  AGAACCTTGT GAGGTGTCCC CTCGGTCATG CACGCACCCG CCCACGGTGA TACAGGAGCT
  K
  TAATACTAGG TCGTGCGTAG AGGGGCTTTG GAACAGTCAG GTACTACTCA ATAGCAGGCC
  AGCTGCTCTT TCCCAGCAGG GTTCAGAACT CAGCTCATC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323819194	CHEV_11_95694266	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219294718					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95723778 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	1387 bp distal
Cpgi3604	CpG island 3604	719 bp proximal
Phospho1	phosphatase, orphan 1	812 bp downstream
Rr369341	regulatory region 369341	236 bp upstream
Rr369342	regulatory region 369342	1291 bp upstream
Rr455203	regulatory region 455203	1039 bp distal
Tssr104395	transcription start site region 104395	1615 bp downstream
Tssr104396	transcription start site region 104396	1579 bp downstream
Tssr104397	transcription start site region 104397	1414 bp downstream
Tssr110283	transcription start site region 110283	1129 bp upstream
Tssr110284	transcription start site region 110284	1164 bp downstream
Tssr110285	transcription start site region 110285	1183 bp downstream
Tssr110286	transcription start site region 110286	1216 bp downstream