rs219299705 SNP Detail

Summary

• ID
  rs219299705
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96679551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAA ATCTCAGGTG ACGAATACAA
  K
  ATTTTTCTTT TAAACGCAAA CGGAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323822800	CHEV_11_96650039	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219299705					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96679551 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			115 bp proximal
Rr455508	regulatory region 455508			within coordinates
Rr455509	regulatory region 455509			535 bp proximal
Rr455510	regulatory region 455510			1988 bp proximal
Tssr104569	transcription start site region 104569			393 bp upstream
Tssr104570	transcription start site region 104570			424 bp upstream
Tssr104571	transcription start site region 104571			488 bp upstream
Tssr104572	transcription start site region 104572			510 bp upstream
Tssr110346	transcription start site region 110346			263 bp downstream