rs219303021 SNP Detail

Summary

• ID
  rs219303021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4748291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTCATA GGCGCTTCAT
  GCGCTACAAA ATACTCATAG GCACTTCACA CGCTACGAAC TGATGGGCGC TTCATGCGCT
  TCGCTGTACT AATGGGCGCT TCATGTGCTA CGATGTACTA ATGAGCGCTT AATGCGCTTC
  GCTGTACTAA TGGGCGCGCC ATGCGCTTCA CTGTACTAAT GGGCGCTTCA TGCGCTTCAG
  Y
  GTACGAACGA GCAAATGAAA CGGGCGAACA GGCGAACCTG TGAACGGGGC GAACGGGGCG
  CTTCATGCGC CACAAACCAG CCCGAACTAC GGTGATACCC AAAACCGATT CGTGTTTCAC
  GTATTCAATT TGGAAAGCTG CAGGAGAGTA ACCAAACGCA AAAGCGCAAC AAGAGTGAAT
  TTAGAAAATG CGCTACAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367234345	MGP_WTSI_6_4698291	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219303021					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367234345	MGP_WTSI_6_4698291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4748291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17126	CpG island 17126	within coordinates
Peg10	paternally expressed 10	within coordinates
Rr146220	regulatory region 146220	within coordinates
Sgce	sarcoglycan, epsilon	1111 bp upstream
Tssr1771	transcription start site region 1771	937 bp downstream
Tssr1772	transcription start site region 1772	850 bp downstream
Tssr1773	transcription start site region 1773	839 bp downstream
Tssr54763	transcription start site region 54763	919 bp downstream
Tssr54764	transcription start site region 54764	678 bp downstream
Tssr59724	transcription start site region 59724	1896 bp upstream
Tssr59725	transcription start site region 59725	1261 bp upstream
Tssr59726	transcription start site region 59726	1235 bp upstream
Tssr59727	transcription start site region 59727	1159 bp upstream
Tssr59728	transcription start site region 59728	1107 bp upstream