rs219304540 SNP Detail

Summary

• ID
  rs219304540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85923250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTGGTCT TCAGCAGTAG
  TTGAAAGCTG GCATTGAATG GGGTCTTGAG GTTAGCAATC TCACTCTGAC CAGCGTAGGA
  GGGTGGGCTG GTGAGCATAC GAAGATGGGC TTCCAGAAAG TCCTGAGTGG AGAACCGAGA
  GTTCCCTGCT CCACCAACCC AGCAAGTGCT AGGGGTACTC AAGAAGGGAG TGAAAGGGGA
  Y
  CTTGAGTTCC AACTGTCCAG GAGAAAGAAC AATGGAGGCG AGAGGGCAGT GAGAGATGTC
  AACTCTTCCT GAGGAGTGAA GTGCAGTTTC TAATGGTTTC TTATATTAAC TAGTTAGCTG
  TGTTCCTTGG CCCAAGAAGA GGAGAGAAGG AGTAGATGCT TGTCCTAGTG GGTGGCTGTC
  TCCACTCCCT TTTCCTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486761	CHEV_17_86015162	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219304540					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85923250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9588	CpG island 9588	1743 bp distal
Cpgi9589	CpG island 9589	363 bp distal
Cpgi9590	CpG island 9590	757 bp proximal
Cpgi9591	CpG island 9591	1266 bp proximal
Cpgi9592	CpG island 9592	1912 bp proximal
Gm55783	predicted gene, 55783	1087 bp downstream
Gm55784	predicted gene, 55784	540 bp downstream
Gm55785	predicted gene, 55785	880 bp upstream
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr149707	transcription start site region 149707	1010 bp upstream
Tssr149708	transcription start site region 149708	812 bp upstream
Tssr149709	transcription start site region 149709	764 bp upstream
Tssr149710	transcription start site region 149710	670 bp upstream
Tssr149711	transcription start site region 149711	646 bp upstream
Tssr149712	transcription start site region 149712	360 bp upstream