rs219308504 SNP Detail

Summary

• ID
  rs219308504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156977668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGGTTGT CGGACTGTCC TGTTAGATTC CACATTCACA
  GTTAGTTGGC AGCAGACCGC CCTATTATTT CCAAATAGAC AGTATTTTTA CTAATTACTA
  R
  TCAGTGTCCA AATAGCAGGC TTTCTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTGGCGTT
  AAGCCATTTT GGGACAGACC CCAAACTTCC CCATAAATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584431	CHEV_2_156961484	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219308504					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156977668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	290 bp distal
Rr397438	regulatory region 397438	401 bp downstream
Samhd1	SAM domain and HD domain, 1	652 bp upstream
Tssr21224	transcription start site region 21224	1261 bp downstream
Tssr21225	transcription start site region 21225	53 bp upstream
Tssr27158	transcription start site region 27158	1774 bp upstream
Tssr27159	transcription start site region 27159	1605 bp upstream
Tssr27160	transcription start site region 27160	638 bp upstream
Tssr27161	transcription start site region 27161	614 bp upstream
Tssr27162	transcription start site region 27162	533 bp upstream