rs219311509 SNP Detail

Summary

• ID
  rs219311509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173421921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCCCAC GGGCTCCCCA
  CCACTTCGCT GTATTCAAAC CAGAGAACAC AGAGCAGGGC AGAAACAGGT CCAGACCCAT
  AATCAAACGT TTACAGAACA CAGAATCATT AATTAATGAA AAATGTTTAA ACTGTACAGC
  ATCCTTTTGT TCATCTGAAA TTCAAAACTA GGAAATCTAA GTTCTGTGTA CTTAAGCCAA
  Y
  GTAGAGTACA TAACTCCCCA AATCAATGGA ATCTGTAGAA AGTTCTCGTT AAAAGTATGG
  CTTCTTTTCT TATCTTTCTT CTTTCTTTCC TTTTTTCTTT CTTTCTTTTT TATTTTTGAG
  TCTAAAGTAT AACCAGTATC CATGTACCTC AGGCATCGGT CCCTACACCA CCCACCGAAT
  CCCTGGACAT GTCCACATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625301	CHEV_2_173405629	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219311509					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173421921 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	1855 bp upstream
Cpgi12846	CpG island 12846	1313 bp distal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	849 bp downstream
Ppp4r1l-ps	protein phosphatase 4, regulatory subunit 1-like, pseudogene	1071 bp downstream
Rr571986	regulatory region 571986	1297 bp distal
Tssr27995	transcription start site region 27995	1948 bp upstream
Tssr27996	transcription start site region 27996	1929 bp upstream
Tssr27997	transcription start site region 27997	1917 bp upstream
Tssr27998	transcription start site region 27998	1850 bp upstream
Tssr27999	transcription start site region 27999	1794 bp upstream