rs219313680 SNP Detail

Summary

• ID
  rs219313680
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135870726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTGTGTG ACCGTGAGTT
  AGTGTACATG CATGCCAGGG TGTGCATGTG GAGGGCAGAA AATAACTTCT GGGAATTAAT
  TTTCTCCTTC TACCGTGTGG TGGTTACAGA TTGGACTGAC GTCATCCGAC TTGGCAGCAA
  GTGCCTTTAC CCACTGATTC ATCTTGGTGA CCCATGGGGG AAAACCATTT TCTTTAGTGG
  M
  TGAGCCATTG TTAAGTTATT CTGCAAATAA CTCTCTCTTG GTCCTGTGTG AACCTTAATA
  AAACACATTG GGTCAAAAAA AGAAAAAAAA AAAAGACATC AGATTCTGGC GAGATGGCTC
  CTCAGTTAAG AGCCATAACT GCTCTGCAGA CCAGAGGTCA GTTGCCAGCT TCCTTGTTGC
  ACTGCCCACA ACTGTCTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321697850	CHEV_5_136317742	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219313680					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135870726 () rs orientation: forward

Symbol	Name	Function Class
Rr622447	regulatory region 622447	1642 bp proximal
Srrm3	serine/arginine repetitive matrix 3	Intron
Srrm3os	serine/arginine repetitive matrix 3, opposite strand	1185 bp downstream