rs219333236 SNP Detail

Summary

• ID
  rs219333236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33673349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGAAAA AAAAGAACAA
  AAATCTATCA ATGAGCCATG TGTCTGGAAA AAGGCCTTTT ATTTAGTTCT TTGTTTTCTT
  TTTTTTTTTT TAAAAAAGAT AAAATTTTGT CACTTTTTAA GTATGTGTAT TTCTGCATGT
  TGGTGTGTGG GTATGTGCAC ATGAGCACAG TGATCCAAGG AGGCCAGAGG CAGTGGGTCC
  Y
  GCTGAAGCCA AAGTTATAGG CAGCTGTAAG GTGCTGGGAA CTGAACCTGG TCCTCTGTAA
  GAGCAGTGTG CACTCTTAAC AGCTGAGCCT TCTCCCTAGG CCCCACTGCA TTCGCTTCTT
  ACAGGAGTGA AAGCCAAGCT CATGTCCAGC AAACACATCA GCTCCATCAG GGCTGACGAA
  GCCATCTGAG TCCAGCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353584049	MGP_WTSI_2_33638857	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	C	T	C	T	T	C	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219333236					SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	C	T	C	T	T	C	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353584049	MGP_WTSI_2_33638857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33673349 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mvb12b	multivesicular body subunit 12B			Intron
				mRNA-UTR
Rr555340	regulatory region 555340			1099 bp distal
Rr555341	regulatory region 555341			74 bp proximal
Rr555342	regulatory region 555342			275 bp proximal
Rr555343	regulatory region 555343			1488 bp proximal
Rr555344	regulatory region 555344			1908 bp proximal
Tssr23614	transcription start site region 23614			1622 bp upstream