rs219335611 SNP Detail

Summary

• ID
  rs219335611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156046659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGGAGA TTTGCACACA
  ACTTCCTAAA GGAAAGGAAT CACGTGGATT CGCTTCCCTG GAGGTGTGGG TATGAAAGAT
  GCCACAGAAA GTTGACAGTT CCCACCCCCC ACTGCCAGCT TAACTAAATA GAAACCTGCA
  GAGAGGAGAC CAGAGACTGG GCTGGGGAGA CGCAGCCCAG CTCCTCCCAA CTCCTTAGGG
  R
  TGAAAGAATC ACTGGTCATA GGGGTCCCGC CCCGCCCTGC CCCGCCCCGC CCTGCTCCGC
  CCCGCCCCGC CCCGCCCTGC TCCGCCCCGC CTTCCAAGTG GTGGAAGTGC CCAATGAGTC
  CTCCCCTTGG AGCCTGGGAG GCCTAGGGAG AAAGTAGTTC TCTTTCGGTG GCAGGGTTGC
  TGTCGAGGGC ACCGAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444094	CHEV_4_155336311	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219335611					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156046659 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	116 bp upstream
Cpgi15495	CpG island 15495	102 bp proximal
Gm42365	predicted gene, 42365	542 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606619	regulatory region 606619	within coordinates
Rr606620	regulatory region 606620	911 bp proximal
Rr606621	regulatory region 606621	1219 bp proximal
Tssr40744	transcription start site region 40744	90 bp upstream
Tssr40745	transcription start site region 40745	140 bp upstream
Tssr40746	transcription start site region 40746	209 bp upstream
Tssr40747	transcription start site region 40747	339 bp upstream