rs219345399 SNP Detail

Summary

• ID
  rs219345399
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:78699091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCGGGG CACCGGGGAA
  GCCCCAGTCA CGCGCCAGGG TTCTCGCTCA GGTACGGGAT TCCCGGGGTA ACCGCCGGCC
  CCTAACCTCA GGGGCGGGTA GTCCACTGGG CAGCGTCGGC CCGGAGGCGG GCTCAGGCCG
  GAAGCCACCC GCGGCCCCGC GAGACCGCGC CCCCGCCCCC GCCTCCTCGT CCTCCTCTTC
  C
  AGTACGAGCT CGGCGGCCAA GGGCGCAGGG GCCAGCCCGC CGGTCCCCGC CGCGCTCTTT
  GTCCCGGCCG CGCGCGGGCG GACGCGTGCG CATCTGCCCC CCCGCCCCCC AGCTCCCCAA
  CCTCCGCCAC CCCCCGCCCG CCACCCCCCA CCCGGCGGAA AAAAAAAAAA AAAGAAGGCG
  CAGCGGGAGC GCGCTCGCGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss354575685	MGP_WTSI_2_78708904	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs219345399					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354575685	MGP_WTSI_2_78708904	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78699091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11839	CpG island 11839	within coordinates
Rr559887	regulatory region 559887	within coordinates
Rr559888	regulatory region 559888	164 bp proximal
Rr559889	regulatory region 559889	441 bp proximal
Rr559890	regulatory region 559890	447 bp proximal
Tssr18521	transcription start site region 18521	within coordinates
Tssr18522	transcription start site region 18522	48 bp upstream
Tssr18523	transcription start site region 18523	262 bp upstream
Tssr18524	transcription start site region 18524	373 bp upstream
Tssr18525	transcription start site region 18525	405 bp upstream
Tssr18526	transcription start site region 18526	454 bp upstream
Tssr18527	transcription start site region 18527	551 bp upstream
Tssr18528	transcription start site region 18528	598 bp upstream
Tssr18529	transcription start site region 18529	735 bp upstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3	Intron