rs219350111 SNP Detail

Summary

• ID
  rs219350111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGTCTG CAGATAGGGG
  TGGCCTATCT CCCATCAGAC TAGGTCTTCT AAGGGTGCTG ACAACACGGT GAGGGCCTTC
  TAACTCCACC ATCAATCCCC AAGTTCTTAC CCCGTCCTTG GGAATCAGTC TCTGGAGCAG
  AGCCAAGAAA GAACAGATAA ACAGTCAAGG CTCAGTGGGA AGGAGGAGAG TTTCTAGAGA
  R
  GACAGAGTTG GCTGCAGGGT TCCAAGGACA ACTAGTTGTA GCAAAGGGTG CTAACTGAGC
  AGTAGCTAGC AGACTGAGGG AACTGAGAAA CAAGGCATGA TGGGAGAGTG GAAGAAACCC
  AGACAACTGA GATGTAAGAA AAAGTTGACA GGGAAGGAAC CAGAGGTCAG AGCTTTGGTG
  CAGGAAGGGA TAGGTCTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787331	MGP_WTSI_11_69415516	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219350111					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787331	MGP_WTSI_11_69415516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492840 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	558 bp downstream
Rr450035	regulatory region 450035	1352 bp distal
Tssr3544	transcription start site region 3544	1310 bp upstream
Tssr102487	transcription start site region 102487	1974 bp downstream
Tssr102488	transcription start site region 102488	811 bp downstream
Tssr102489	transcription start site region 102489	765 bp downstream
Tssr108712	transcription start site region 108712	1996 bp upstream
Tssr108713	transcription start site region 108713	1845 bp upstream
Tssr108714	transcription start site region 108714	1777 bp upstream
Tssr108715	transcription start site region 108715	1743 bp upstream
Tssr108716	transcription start site region 108716	1439 bp upstream
Tssr108717	transcription start site region 108717	1425 bp upstream
Tssr108718	transcription start site region 108718	1361 bp upstream
Tssr108719	transcription start site region 108719	1359 bp upstream
Tssr108720	transcription start site region 108720	1343 bp upstream
Tssr108721	transcription start site region 108721	1334 bp upstream
Tssr108722	transcription start site region 108722	1256 bp upstream
Tssr108723	transcription start site region 108723	1219 bp upstream
Tssr108724	transcription start site region 108724	1173 bp upstream
Tssr108725	transcription start site region 108725	1151 bp upstream
Tssr108726	transcription start site region 108726	1049 bp upstream
Tssr108727	transcription start site region 108727	1028 bp upstream
Tssr108728	transcription start site region 108728	984 bp upstream
Tssr108729	transcription start site region 108729	899 bp upstream
Tssr108730	transcription start site region 108730	867 bp upstream
Tssr108731	transcription start site region 108731	825 bp upstream
Tssr108732	transcription start site region 108732	764 bp upstream
Tssr108733	transcription start site region 108733	438 bp downstream
Tssr108734	transcription start site region 108734	729 bp downstream
Tssr108735	transcription start site region 108735	796 bp downstream
Tssr108736	transcription start site region 108736	834 bp downstream
Tssr108737	transcription start site region 108737	1524 bp downstream