rs219351561 SNP Detail

Summary

• ID
  rs219351561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163443510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGGCAC CCTCTATTAA
  AAACAAACAA AACAGATAAA CATAACTCAG AATTCCCAGG GTACCTCGAA CCCCTCTCAC
  ATATTTAGTT TGACATCTGG CAAAATCCAT TGTGTCCTTA TGTCCTTGAA GGTCACTTCC
  CACCACTCTA GGACTCCACT TATTCATAAG GTAGGGAAAG GATGAGGGAC TTAAGGTTAT
  Y
  CCTTTGAATA TGACATTTTC TTAGACCGAC GAAATTTCTC TCTAGAAATG GTCTGTTGTC
  CTTATTCTAC CTAAAAGAGA TTTGCCTCGA AATTACAGTT GCACAAACCA TGGGTATGTG
  TGGTGAGGCT AGTAAATGGG TCAGATGTGG AGTTAATAAA CTCCTTTTCA AACTACTGCT
  GTCTCGAGAC AACATTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356411350	MGP_WTSI_2_163427326	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219351561					SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356411350	MGP_WTSI_2_163427326	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163443510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	408 bp proximal
Rr397464	regulatory region 397464	949 bp upstream
Rr569431	regulatory region 569431	1883 bp distal
Rr569433	regulatory region 569433	157 bp distal
Rr569434	regulatory region 569434	234 bp proximal
Rr569435	regulatory region 569435	422 bp proximal
Rr569436	regulatory region 569436	618 bp proximal
Rr569437	regulatory region 569437	743 bp proximal
Tssr21475	transcription start site region 21475	704 bp upstream
Tssr21476	transcription start site region 21476	741 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	724 bp upstream