rs219351802 SNP Detail

Summary

• ID
  rs219351802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88277881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAATAAAT AAATAAATAA
  ATAAATAAAT AAATAAATAA ATTAGAATAA GACTTCCTTA TTGAGTAGGG GTCAAGTAAA
  GTTTAAGTTT CCAAGACCTC CCTGGAAACT GGCATTCTAC TTGGCAGAAA AGGGCATGCA
  TGTGGGTAAC TGATATCCTG GTTGGCAAGT TAGGACATGG ATGTTAGGCA AGACAAGTCC
  Y
  TTGACACAGC TGGATACCCC CAGCCAATGA GGGCAGGATA AATGCACAGT AAAGACACGT
  TCCTAAGGAA ATCCCCCATC CCTAAAGCCT GATTAGTGGA ATAACTTGAC ATGGATGTTT
  GTGGATTTTA GGCTTAAAAT TTCCATAGGA TTCTAGCTAG GAGACACAGT TCCTGAGTCT
  GGACTATGTC CCTGAATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500518	CHEV_17_88369793	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219351802					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88277881 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	1233 bp upstream
Rr333904	regulatory region 333904	1481 bp distal
Rr343663	regulatory region 343663	882 bp distal
Rr405523	regulatory region 405523	1591 bp upstream