rs219373776 SNP Detail

Summary

• ID
  rs219373776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87193935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAAACCT ATTCTCCGAG
  GTTTGACACA CCGGAAAGCT TTCCCCAGCC ACCCCCTACT CCCCTCGAAA TACAACTGAG
  TTTCTCTACC GCCAAGGACC TGTCGTGCCT CCGATGAATC CCGCCCACTT CGCGCCCTCA
  AGCCAATCAG AGGGTGGCGT CACTCCCTCT CAGTTGCCAT GGTGCCCGCC AAGTCCTTTC
  Y
  GCCACTTACC AGATGTGAGC AGGCTGGTCC AGCCGGTGAA AGCGGGTGGC AAAGGACAGC
  AGCGTCACCA CAGCCAACGT GGCCCACCAC CCTGCCGCCT GGAAGCGCCG CGAGCTCCAA
  GCAGGCCGTT TAAGTTTCCG TGCTGCAGCC TGGGGGACCA CGTCTCGGCT CACGGCTCTG
  GCAGCCTGCG GCACACAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386776118	MGP_WTSI_12_88488111	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219373776					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386776118	MGP_WTSI_12_88488111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87193935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	4 bp upstream
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	within coordinates
Rr403430	regulatory region 403430	362 bp upstream
Rr470321	regulatory region 470321	within coordinates
Rr470322	regulatory region 470322	37 bp distal
Rr470323	regulatory region 470323	67 bp proximal
Rr470324	regulatory region 470324	324 bp proximal
Rr470325	regulatory region 470325	731 bp proximal
Tssr114506	transcription start site region 114506	within coordinates
Tssr114507	transcription start site region 114507	542 bp upstream
Tssr114508	transcription start site region 114508	624 bp upstream
Tssr114509	transcription start site region 114509	809 bp upstream
Tssr117156	transcription start site region 117156	257 bp downstream
Tssr117157	transcription start site region 117157	323 bp downstream
Tssr117158	transcription start site region 117158	722 bp downstream