rs219374337 SNP Detail

Summary

• ID
  rs219374337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACACACA CACACACACA CACACACACC TCACACACAC
  CTGGATTTCT AAAGAAACAG AAATTCCAGA GAGATGCTGG GGGTGACCTC CTAGGACCAC
  R
  GTGAAGTCTC AGGCTGCAGC TCAGCCACCT CCCTGGGCCT TCCCTGGGCT GCTGGCGAGT
  CCTGCACTGG AGCAGAGTGG AAGAAGCCAC CCTGAGAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320569709	CHEV_2_154018332	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219374337					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034516 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1768 bp distal
Rr567775	regulatory region 567775	1562 bp distal
Rr567776	regulatory region 567776	1520 bp distal
Rr567777	regulatory region 567777	within coordinates
Rr567778	regulatory region 567778	1151 bp proximal
Tssr20971	transcription start site region 20971	1837 bp downstream
Tssr20972	transcription start site region 20972	1828 bp downstream
Tssr20973	transcription start site region 20973	1814 bp downstream
Tssr20974	transcription start site region 20974	1764 bp downstream
Tssr20975	transcription start site region 20975	1739 bp downstream
Tssr20976	transcription start site region 20976	1323 bp downstream
Tssr20977	transcription start site region 20977	759 bp upstream