rs219377889 SNP Detail

Summary

• ID
  rs219377889
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79894341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAATTCC CAGCACCCAT
  ATAGCAGTTC ACAACCATCT GTAACTCCAC TTACAGGAGA CCAACACCCT TTTCTGGCCT
  CCTCTGGCAC TGTGCACATA TGGTGCACAG ATGTGCACTC AGGCACACAT AAAATAAAAA
  GATTTGAAGA ATAAAACAGG CTGGAGAGAT GTCTCACTGG CTAAGGGCCC TTGGTGCACT
  M
  GCAGAGGACC TAGGTTCCGT TCCCATCAGT CCCAAAGGTG GCTCACAGCC ATGTATAACT
  CCAGTCCCAA AGGATCTGAC ATTCTCTTCT GACTTACACA GGCACCAAAC AAGAATGCGG
  TAAAAACTTA TACACATAAA ATACAAACAT TTGTGAATTT TTAAGAATGA AAAACCTTTT
  GTTACTGTGT AACCGGTTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372041247	MGP_WTSI_7_87389479	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219377889					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372041247	MGP_WTSI_7_87389479	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79894341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	1521 bp proximal
Gm73873	predicted gene, 73873	150 bp downstream
Rr158192	regulatory region 158192	1341 bp distal
Rr165873	regulatory region 165873	260 bp proximal
Rr168083	regulatory region 168083	1259 bp proximal
Rr400401	regulatory region 400401	1602 bp upstream
Tssr2310	transcription start site region 2310	1766 bp upstream
Tssr67422	transcription start site region 67422	1776 bp upstream
Tssr67423	transcription start site region 67423	1782 bp upstream
Tssr67424	transcription start site region 67424	1837 bp upstream
Tssr67425	transcription start site region 67425	1854 bp upstream
Tssr67426	transcription start site region 67426	1913 bp upstream
Tssr67427	transcription start site region 67427	1936 bp upstream
Ttll13	tubulin tyrosine ligase-like family, member 13	1783 bp upstream