rs219378579 SNP Detail

Summary

• ID
  rs219378579
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGTAGA ACAATGTGGG
  GAAACTGTAG CCAGACAACG GTAATGTTGG GAAGGAGCCA AAGAAACTTA TTCTAAAAAC
  TAACATTTTG TTTACAGATT AGCATTTATA GGGAAAAACT AAATCCAATG TACCAGGCCC
  TAGGGCAGCT TGGGACTTCC CTATAGCTGA ACAGCTTCTG CTGTGAACAG CTGTCTGAAT
  S
  CAGACATCTC AGGGACAGCT TGTAAGGAGG CAGTTGTCTG AATCCAGCCA TCTCAAGGAC
  AACTTCTCCA TCTTGTTGGC AGGGTCAAAC AACCTAGGAG CGAACACCTA CCCCACTTCT
  CCAAATGTTT TCTTAACTGT CTGTTAACAG GTAAAGAATA TAGAAATTGC TGTTTTTCTA
  AACCAAGGTA CATATGTTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386546260	MGP_WTSI_12_77354444	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219378579					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386546260	MGP_WTSI_12_77354444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1430 bp proximal
Gm47525	predicted gene, 47525	718 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1841 bp upstream
Rr403350	regulatory region 403350	1588 bp upstream
Rr468112	regulatory region 468112	1351 bp proximal
Tssr113934	transcription start site region 113934	1752 bp upstream
Tssr113935	transcription start site region 113935	1787 bp upstream
Tssr113936	transcription start site region 113936	1833 bp upstream
Tssr113937	transcription start site region 113937	1875 bp upstream
Tssr113938	transcription start site region 113938	1891 bp upstream
Tssr113939	transcription start site region 113939	1914 bp upstream
Tssr113940	transcription start site region 113940	1996 bp upstream
Tssr116711	transcription start site region 116711	1589 bp downstream
Tssr116712	transcription start site region 116712	1615 bp downstream