rs219378764 SNP Detail

Summary

• ID
  rs219378764
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131801581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGAGGTAC TGCGACAGTG CTCTGGCCTC
  TCCCCCGCCC CTTCAGTAGC TGAGGACCCG ACCCTGACTT GGCCCCAAGC AACTATGCCT
  AGAACTCCAG CTTCCTTAAA GTCCACCCGG AATCAGCTAT TCTCCTAGAG CCTGTACGTT
  W
  AGAAGGCGGC TCCCTGGGAA TAGAAGGGGC TGCCTTCTCC CTGTTGCAGG AATTTAAGGG
  GTCAGTTAAA TGCAGCCATT GTCTTTCGGG GGAGCCAGAG GGCCCTGGAA TAACCACACA
  ACCCTTGAGG GAGAGTGGTG CTCCCCTGTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321330377	CHEV_4_131630185	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219378764					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131801581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	120 bp proximal
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Gm10300	predicted gene 10300	427 bp upstream
Rr1070	regulatory region 1070	999 bp upstream
Rr600863	regulatory region 600863	1064 bp distal
Rr600864	regulatory region 600864	within coordinates
Rr600865	regulatory region 600865	438 bp proximal
Rr600866	regulatory region 600866	1012 bp proximal
Tssr39361	transcription start site region 39361	1334 bp upstream
Tssr43633	transcription start site region 43633	980 bp downstream
Tssr43634	transcription start site region 43634	1029 bp downstream
Tssr43635	transcription start site region 43635	1147 bp downstream