rs219385990 SNP Detail

Summary

• ID
  rs219385990
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:81123541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAACGTTC ATTGACACGA
  GTCACTGGTC TGGTTTGAGA TCTCTGAGGT CTGTGACACC ATGAATACTG GATCCTCATC
  AGGACTCCTC CTGGTTATCC TGCTGTTGCC CTGTGTCATG GAGATCCTAT AGCTTTGCAT
  CAGCAGGACA GGCCCTTTCA TGTGTCCCAA CCTTGCACAA ATAATAAAGA TTTGGGGGTA
  S
  GCTGATTCAG AGTCCTGGAT CTGGGCCTAG GTGGTAGCTG TGTTTTCAAA TGCTCTCATT
  ATATGCAGAT AGCCATGCTT TCTTTTAGAT TTGCCTGAAG ATCCCTTAGT CATTATTGAA
  CATAATCCTA GTCAATGTTT AAGACATTTT TTCCTGTCCC CTAAAAATCA ATAAAAAAAT
  AAATCCCCAG AGTCACTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375303824	MGP_WTSI_8_82920811	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219385990					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375303824	MGP_WTSI_8_82920811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:81123541 () rs orientation: forward

Symbol	Name	Function Class
Gm30605	predicted gene, 30605	1727 bp upstream
Tssr81895	transcription start site region 81895	1850 bp upstream
Tssr81896	transcription start site region 81896	1803 bp upstream
Tssr81897	transcription start site region 81897	1793 bp upstream
Tssr81898	transcription start site region 81898	1778 bp upstream
Tssr81899	transcription start site region 81899	1747 bp upstream
Tssr81900	transcription start site region 81900	1720 bp upstream
Tssr81901	transcription start site region 81901	1707 bp upstream
Tssr81902	transcription start site region 81902	1684 bp upstream
Tssr81903	transcription start site region 81903	1672 bp upstream