rs219393974 SNP Detail

Summary

• ID
  rs219393974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128614518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCAAGA TGAAAACCAC
  ACCCCTCGTG GCCAGGAGCT AAGTGTGTTC TTTGCCTCCT AACTGTACCC TTTATATCTT
  TTAGCATTAG AATTAGCATT TTTTTTCCTC TTCAACCTTG TTTTTTCACC TCATAAATCC
  TGAAATACTT TGTGCATGTG AATGTTCATG GGTGTGCACG TGCGTGCATG CATGAATATG
  Y
  GTGTGCATGT GTGCAGGCCA GAGGTTGCTA TCAGGTGTCT CTCTCAATCA CTCTTCACTT
  TATATATTGA AACAAAAATC TCTCTTGTGA ACCCCAAGTT CACAAGTTTG ACTAATTCTC
  TAGCCAGCCT GCTCCAGGAA CCCCCTGTTT CCACCTCCCA AGTGCTGGGA TTATAGGTGG
  GCTGCTACAC CCACCCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321306922	CHEV_4_128397969	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219393974					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128614518 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	650 bp downstream
Phc2	polyhomeotic 2	within coordinates
Rr600012	regulatory region 600012	131 bp distal
Rr600013	regulatory region 600013	356 bp proximal
Tssr39071	transcription start site region 39071	1456 bp upstream