rs219396406 SNP Detail

Summary

• ID
  rs219396406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166902265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGGCTG AGAGTCACCG
  GTGCCCTTCA AACACAGCAA ATACCCAAAC CCCACGAAGC CGGCCCTTCT GCCTTTATAT
  GTTAATCATT TATTAAGGAA GGGTAAAACA TGCAGATTCT AATCACAGCA CAAGCACTCA
  ACCTTGCGGA TTCCCAACCG TGCTACAAAC TCTAAACTTA ACCTCACAAT TTAGGCGATT
  Y
  CAAGGGATCC AATCCTCCAT TCCCGGACTC CTTCACTTGC TTGGGGTCAG AAAGAGAGAG
  TCATCAACTC CCAAACTACT GTTTGGTTTG CCTTCAACCA GGTTACTTAA TCTACAGCTT
  AGGTTTCATT TCCTTTCTTA CAAAATGATT GCTGGGGCAA AAGGAGTACA AGTGTGTCAA
  TCCAAAACCA TGTGCCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497115	MGP_WTSI_2_166885845	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219396406					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497115	MGP_WTSI_2_166885845	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166902265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	1775 bp proximal
Gm75600	predicted gene, 75600	207 bp upstream
Rr570435	regulatory region 570435	1629 bp distal
Rr570436	regulatory region 570436	within coordinates
Rr570437	regulatory region 570437	81 bp proximal
Rr570438	regulatory region 570438	218 bp proximal
Rr570439	regulatory region 570439	1045 bp proximal
Rr570440	regulatory region 570440	1546 bp proximal
Tssr21785	transcription start site region 21785	1453 bp downstream
Tssr21786	transcription start site region 21786	171 bp upstream
Tssr21787	transcription start site region 21787	925 bp upstream
Tssr21788	transcription start site region 21788	946 bp upstream
Tssr27731	transcription start site region 27731	276 bp upstream
Tssr27732	transcription start site region 27732	218 bp upstream
Tssr27733	transcription start site region 27733	171 bp upstream
Tssr27734	transcription start site region 27734	72 bp downstream
Tssr27735	transcription start site region 27735	102 bp downstream
Tssr27736	transcription start site region 27736	486 bp downstream
Tssr27737	transcription start site region 27737	493 bp downstream
Tssr27738	transcription start site region 27738	504 bp downstream
Tssr27739	transcription start site region 27739	724 bp downstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates