rs219400137 SNP Detail

Summary

• ID
  rs219400137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72221228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCAGC TCCCATTAGC
  CGCCCGGGCA GCTGGTGACC TTGCATTTCT GCAAGGGAGC AACCCACACT CACTGGCCAG
  GTCAGTTCCA CGGAGCTCTG GAGATCACCG TATGGATGTA TCTCAGGACT GGAAAACTGG
  GAAAATCGAA CAACTGTTTT GTGTATCTCT GCCTCCATCT CCTCCAAAAG CAAGTACTCA
  R
  TAAACATATG AAGAAGAAAG GAAGGAAGGA AGGAAGGAAG GAAGGAGGGA GGGAGGGAGG
  GAGGGAGGGA GGGAGGGAGG GAGAGAAGGA AGGAGGAAGG CAGGAAGCTG GGTGGCAGGC
  AATCAGAGAG CATGACTGTA GTGATGTAAA CACTACTCTT GCCCTGGAAG ATAAATATGT
  ACCCAGTGCA TTTGCCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342259	CHEV_2_72228941	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219400137					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72221228 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	53 bp distal
Rr558966	regulatory region 558966	694 bp distal
Rr558967	regulatory region 558967	75 bp proximal
Rr558968	regulatory region 558968	1533 bp proximal
Tssr18338	transcription start site region 18338	479 bp downstream
Tssr18339	transcription start site region 18339	145 bp downstream
Tssr18340	transcription start site region 18340	129 bp downstream
Tssr18341	transcription start site region 18341	112 bp downstream