rs219400447 SNP Detail

Summary

• ID
  rs219400447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGGAG CCTCAGGTTT
  TGTTGATCCG GAGTTTGAAG GCCACACGGC CAGCGAACTT GTCCCGCTCA TCGTCTGTGG
  CAATATTGGC AGCGTTGATG CGGCATTCAA CATTCACCTC CACGTTGGGG GTCACATTCA
  GGAACTTTAC AGCCACCAAA GGCTGAGTAT AGTTTACCTG GGCCAGGAGA AGAAAAAAAC
  K
  TAAGCCTCTG GTACCTTGGC GTCTTTCCCA AGAACACCAT TTTTTCATTC AGGAGCCACC
  GTCAAGGACC TTCCGAGGTG GGACTTACAT GGAACTTTTT GCCATAGTAG GGAAAGTACA
  TCAGATCAAT GCTGCCATTA GCAGGGAACA TGACAAAGTG GCCAAGGTTC TCAGCATCTT
  CATCTCTCTG TGGGGGTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787314	MGP_WTSI_11_69414938	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219400447					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787314	MGP_WTSI_11_69414938	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492262 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	1697 bp distal
Rr450034	regulatory region 450034	1826 bp distal
Rr450035	regulatory region 450035	774 bp distal
Tssr3544	transcription start site region 3544	732 bp upstream
Tssr102487	transcription start site region 102487	1396 bp downstream
Tssr102488	transcription start site region 102488	233 bp downstream
Tssr102489	transcription start site region 102489	187 bp downstream
Tssr108712	transcription start site region 108712	1418 bp upstream
Tssr108713	transcription start site region 108713	1267 bp upstream
Tssr108714	transcription start site region 108714	1199 bp upstream
Tssr108715	transcription start site region 108715	1165 bp upstream
Tssr108716	transcription start site region 108716	861 bp upstream
Tssr108717	transcription start site region 108717	847 bp upstream
Tssr108718	transcription start site region 108718	783 bp upstream
Tssr108719	transcription start site region 108719	781 bp upstream
Tssr108720	transcription start site region 108720	765 bp upstream
Tssr108721	transcription start site region 108721	756 bp upstream
Tssr108722	transcription start site region 108722	678 bp upstream
Tssr108723	transcription start site region 108723	641 bp upstream
Tssr108724	transcription start site region 108724	595 bp upstream
Tssr108725	transcription start site region 108725	573 bp upstream
Tssr108726	transcription start site region 108726	471 bp upstream
Tssr108727	transcription start site region 108727	450 bp upstream
Tssr108728	transcription start site region 108728	406 bp upstream
Tssr108729	transcription start site region 108729	321 bp upstream
Tssr108730	transcription start site region 108730	289 bp upstream
Tssr108731	transcription start site region 108731	247 bp upstream
Tssr108732	transcription start site region 108732	186 bp upstream
Tssr108733	transcription start site region 108733	1016 bp downstream
Tssr108734	transcription start site region 108734	1307 bp downstream
Tssr108735	transcription start site region 108735	1374 bp downstream
Tssr108736	transcription start site region 108736	1412 bp downstream