rs219401048 SNP Detail

Summary

• ID
  rs219401048
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113418633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC TCAATAAAAC AAACAATCTG
  K
  GTCCTTAGCA AAAACAGTAG GTACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910880	CHEV_6_113391666	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219401048					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113418633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	710 bp proximal
Gm43928	predicted gene, 43928	778 bp upstream
Jagn1	jagunal homolog 1	897 bp upstream
Rr132170	regulatory region 132170	33 bp distal
Rr145547	regulatory region 145547	367 bp proximal
Rr146999	regulatory region 146999	1634 bp distal
Rr399832	regulatory region 399832	672 bp upstream
Tssr58212	transcription start site region 58212	899 bp upstream
Tssr58213	transcription start site region 58213	956 bp upstream