rs219406515 SNP Detail

Summary

• ID
  rs219406515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17841853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATC TGTCTGTCCA TCTTTCTTGG
  R
  TAGACGGGGA GTGAAATCCG GGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320673708	CHEV_3_17687689	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219406515					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17841853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	558 bp distal
Gm10742	predicted gene 10742	791 bp upstream
Gm56811	predicted gene, 56811	551 bp upstream
Gm65999	predicted gene, 65999	1973 bp downstream
Gm66000	predicted gene, 66000	within coordinates
Rr573839	regulatory region 573839	1760 bp distal
Rr573840	regulatory region 573840	1641 bp distal
Rr573841	regulatory region 573841	1343 bp distal
Rr573842	regulatory region 573842	562 bp distal
Rr573843	regulatory region 573843	61 bp distal
Rr573844	regulatory region 573844	1143 bp proximal
Rr573845	regulatory region 573845	1644 bp proximal
Rr573846	regulatory region 573846	1768 bp proximal
Tssr32676	transcription start site region 32676	1371 bp upstream
Tssr32677	transcription start site region 32677	844 bp upstream
Tssr32678	transcription start site region 32678	1918 bp downstream