About   Help   FAQ
rs219420160 SNP Detail
Summary
  • ID
    rs219420160
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr8:11684155 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGAGGCAGA GACCGGCGGA
    TTTCTGAGTT CCAGGCCAGC CTGGTCTACA AAGTTAGTTC CAGGACAGCC ATGGCTATAC
    AGAGAAACCC TGTCTCGGAA AACCAAACCA AACCAAACCA AACCAAAAAG TAATCGCTGG
    TGAGATTTCC CAAGGGAAAC ATACAAGTAC AAAGTGGCAG TAAGATGAAC AGGTGTCAAG
    W
    GAAAAGCAGT TAGTTAACCT TTAACGTGGA GCCAGGATTT GAACCTGTTA GCTATGCCGT
    GTTCAACCTA GGAAACTGGC TTTGGAATTG TGGAGGGTCC TTTTAAATGG GGCATCTGGT
    AAAAGCAAGA TAGTTAGCCT TCACAATGGC CAGTTTTCCG GGAATAAATA AGCCCCATAA
    ATTACTGGGT AACCTGAGCA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss322492719 CHEV_8_11634155 CHEVERUD SCREENING_POP f SNP A T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs219420160 SNP A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:11684155 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ankrd10 ankyrin repeat domain 10 within coordinates
Cpgi20087 CpG island 20087 330 bp proximal
Gm64331 predicted gene, 64331 1215 bp upstream
Mir7238 microRNA 7238 1539 bp downstream
Rr186041 regulatory region 186041 within coordinates
Rr400761 regulatory region 400761 1563 bp upstream
Tssr80389 transcription start site region 80389 871 bp downstream
Tssr80390 transcription start site region 80390 897 bp downstream
Tssr80391 transcription start site region 80391 1486 bp downstream
Tssr80392 transcription start site region 80392 1538 bp downstream
Tssr80393 transcription start site region 80393 1574 bp downstream
Tssr80394 transcription start site region 80394 1590 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory