rs219430633 SNP Detail

Summary

• ID
  rs219430633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112575109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTTGG GGACGACTGA
  CCTCTGGTCA CATGACCGCA GATGAGGTCA CAACCTATAG TTAGAGAAGC TCAGCTTTAG
  TTCATAGTCC CGTTGGCAGA ATAATTTGAT ATTAGGCAAC TGTGATTGGA AGGTTGTCTG
  TGCAACATGA ATGAAGGTCC TGAGCTGATA CGAAGAAGAA GAGAGTAATG GGTGAGTTTG
  Y
  ATTATAGTAA CTCATTCTTG TGGTGACTGG TCTAGCCACG TGAGACTCGC TCTAGTTCAC
  AGAGGTCTAA TTTAGTCTAG AGAGATATAA CTCAGTCTCT TGAGAAAAGA CAGAAACTTG
  CTTGTGAGCT CGATGCTCCA TGACTTCATC ACCTAGAAAA TGCCCCACCC CCGACCTTGA
  CACATTAAGG AATCAAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390000092	MGP_WTSI_13_113228783	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219430633					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390000092	MGP_WTSI_13_113228783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112575109 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	497 bp upstream
Gm59881	predicted gene, 59881	779 bp upstream
Gm59893	predicted gene, 59893	253 bp downstream
Rr369776	regulatory region 369776	926 bp upstream
Rr395952	regulatory region 395952	within coordinates
Rr403991	regulatory region 403991	1407 bp upstream
Rr486370	regulatory region 486370	543 bp distal
Rr486371	regulatory region 486371	42 bp distal
Rr486372	regulatory region 486372	300 bp proximal
Rr486373	regulatory region 486373	801 bp proximal
Rr486374	regulatory region 486374	1456 bp proximal
Tssr121117	transcription start site region 121117	397 bp downstream
Tssr121118	transcription start site region 121118	343 bp downstream
Tssr124051	transcription start site region 124051	513 bp upstream
Tssr124052	transcription start site region 124052	1412 bp downstream