rs219452586 SNP Detail

Summary

• ID
  rs219452586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77739945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTTC TTCTTCTTCT
  TCTTTTTTTT TTTTTTTTTT AATTTTGAGA GAATCTAACT CAGCGATCTT CTTTCTCTGG
  TGGAAAATGA TTTTGAGGTA TCTTACGTAA GTTGTCTTTG TCTTAGGGAA AAAGCCACAG
  GGTCTTATGG ATGTAACGAT CTGCGTTTGA GTCTTGGTTT GGAGTTGATC TGGGTAAGTA
  R
  TGTGAGACAT GGTAAACAGT TCATTCGGTC TGTTGTTGAG AGGAGCATCT CTAGTTGCTG
  AGAATATATA TATATATATA TATATATATA TATATATTAT ATATATATAT ATATATATAG
  TTAGAAGTGG CTGTTGGATT ATGTATATGT ATATATAATT ATTTATTTAA TGTAGCCATC
  TTCAGACACA CCAGAAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss380977328	MGP_WTSI_10_77366856	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs219452586					SNP	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380977328	MGP_WTSI_10_77366856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77739945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1765	CpG island 1765	688 bp distal
Gm53590	predicted gene, 53590	within coordinates
Gm66732	predicted gene, 66732	within coordinates
Gm66819	predicted gene, 66819	712 bp downstream
Lrrc3	leucine rich repeat containing 3	1575 bp upstream
Rr434596	regulatory region 434596	1725 bp distal
Rr434597	regulatory region 434597	1586 bp distal
Rr434598	regulatory region 434598	604 bp distal
Rr434599	regulatory region 434599	340 bp distal
Tssr98252	transcription start site region 98252	1650 bp upstream
Tssr98253	transcription start site region 98253	1582 bp upstream