rs219456806 SNP Detail

Summary

• ID
  rs219456806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCGCACG TACTTCATTC
  CCAGATCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCACACACA CACACACACA
  CACACACACA CATACACACA CACACACCTC AGGCCCGCCA TCCCAACAAT ACATCACATC
  TCCATGCTGC AGACCTGAGG CCTGGGAGGT GTTGCCCATG GATCCTGGGA GGTTCATGAG
  Y
  CCTCAAAGGG ATTCAAGCAG CAGAAACAGG GACTGAGACA TGGAGGACCA GGTTGCTCCT
  TGGTCACACA TGGAGGGGTA GCTGGCCTCT CCCCACCTCT AGCCCAAAGA AACCATAATT
  TAGTATAGAA GGGGCCTTCT AATGCTGGGG TGTCACAAGG AGGATGAGAA TTTCTTGGGT
  CACCCTTGAT CTCACCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384336295	MGP_WTSI_11_94814832	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219456806					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384336295	MGP_WTSI_11_94814832	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844344 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	476 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	49 bp distal
Gm74287	predicted gene, 74287	733 bp downstream
Gm74290	predicted gene, 74290	1893 bp upstream
Tssr3647	transcription start site region 3647	1534 bp downstream
Tssr104284	transcription start site region 104284	1981 bp downstream
Tssr104285	transcription start site region 104285	1951 bp downstream
Tssr104286	transcription start site region 104286	1918 bp downstream
Tssr104287	transcription start site region 104287	1894 bp downstream
Tssr104288	transcription start site region 104288	1854 bp downstream
Tssr104289	transcription start site region 104289	1846 bp downstream
Tssr104290	transcription start site region 104290	1798 bp downstream
Tssr104291	transcription start site region 104291	1783 bp downstream
Tssr104292	transcription start site region 104292	1686 bp downstream
Tssr104293	transcription start site region 104293	1579 bp downstream
Tssr104294	transcription start site region 104294	1545 bp downstream
Tssr104295	transcription start site region 104295	1501 bp downstream
Tssr104296	transcription start site region 104296	1477 bp downstream
Tssr104297	transcription start site region 104297	1454 bp downstream
Tssr104298	transcription start site region 104298	1420 bp downstream
Tssr104299	transcription start site region 104299	1386 bp downstream
Tssr104300	transcription start site region 104300	1366 bp downstream
Tssr104301	transcription start site region 104301	1246 bp downstream
Tssr104302	transcription start site region 104302	1232 bp downstream
Tssr104303	transcription start site region 104303	1213 bp downstream
Tssr104304	transcription start site region 104304	1171 bp downstream
Tssr104305	transcription start site region 104305	1149 bp downstream
Tssr104306	transcription start site region 104306	1134 bp downstream
Tssr104307	transcription start site region 104307	1117 bp downstream
Tssr104308	transcription start site region 104308	1044 bp downstream
Tssr104309	transcription start site region 104309	1020 bp downstream
Tssr104310	transcription start site region 104310	934 bp downstream
Tssr104311	transcription start site region 104311	885 bp downstream
Tssr104312	transcription start site region 104312	816 bp downstream
Tssr104313	transcription start site region 104313	800 bp downstream
Tssr104314	transcription start site region 104314	395 bp downstream
Tssr104315	transcription start site region 104315	1891 bp upstream
Tssr110225	transcription start site region 110225	1981 bp upstream
Tssr110226	transcription start site region 110226	1941 bp upstream
Tssr110227	transcription start site region 110227	1928 bp upstream
Tssr110228	transcription start site region 110228	1868 bp upstream
Tssr110229	transcription start site region 110229	1848 bp upstream
Tssr110230	transcription start site region 110230	1811 bp upstream