rs219459192 SNP Detail

Summary

• ID
  rs219459192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103025726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTCCG GGCTGAGAAC
  CAAGAATGAG TCAAGACAAG AGATTTCGGT GTACAGGTTG ACAGGCAGGG CAGGAAAACC
  TCAGAGGAGA GGGAGAAAGC GCCTAAGTCC TCAGTAAATG GCAACTTAGT ATGTGGGCTG
  ACAGCAGGAA CCCACAGAGT CCCAGCCCAT GCTGGCTCTC GGTGGCCCTT ATCCATCACC
  R
  CACTTCCAAA ATAGCAGAGA GCCAAACATC AGAGAGTTGG TTTCTGTTGT TATTGTTGTT
  GTTGTTGTTG TTGTTGTTGA TTTCACAATG CTAGGAATTG AACCCAGGGC CTTGCCAATG
  CTAGAAAAGT GCTTTATCAT GGAGCTACAC CCCAGGCCTT TGCTGTTATT GTTGTTTGCT
  GGGTTTTGTT TTTGTTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384516985	MGP_WTSI_11_102996214	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219459192					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384516985	MGP_WTSI_11_102996214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103025726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3955	CpG island 3955	1557 bp distal
Gm57409	predicted gene, 57409	1999 bp upstream
Hexim2	hexamethylene bis-acetamide inducible 2	within coordinates
Rr403011	regulatory region 403011	1772 bp downstream
Tssr105311	transcription start site region 105311	1720 bp downstream
Tssr105312	transcription start site region 105312	1568 bp downstream
Tssr105313	transcription start site region 105313	1541 bp downstream
Tssr105314	transcription start site region 105314	1524 bp downstream
Tssr105315	transcription start site region 105315	855 bp downstream
Tssr111156	transcription start site region 111156	1982 bp upstream