rs219466083 SNP Detail

Summary

• ID
  rs219466083
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98658684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGATTT TAAAGAAAGA
  TATTTTTATG GTAATTGTTG CTCGTCTATT TTACTATATA TTTATGTAAT AAATATATGA
  TGAAAATAAC CCCCTTGGGC ACCCCCCCTT AGACTTGCGT GCTGTTTCCC CATATTCTCC
  CATCTGCTGG CAGAGTACCC ACCCCACAAG CTGACCAGAT GGAGAGGTGT CTTCCCCCCC
  M
  CCCACACCCC CTTGGCAGTA GTCCCCCACC CCCACCCCAA TTCCCCAAAC GAGCACACAT
  CACAGAAGCC AGCTCAGCTG TGAACTATTG GATTTGAGAC AGGAACAGAA CAAATCGAGG
  GGCCAGAGGA GGGTGGAGAG AGCAAGAGTG GTTTAAATAG GGGAGGATGG GAGCATGGCG
  GTGGGGGTGG GGGAAGAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384419258	MGP_WTSI_11_98629172	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219466083					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384419258	MGP_WTSI_11_98629172	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98658684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	357 bp proximal
Gm57390	predicted gene, 57390	111 bp downstream
Nr1d1	nuclear receptor subfamily 1, group D, member 1	74 bp downstream
Rr456271	regulatory region 456271	1475 bp distal
Thra	thyroid hormone receptor alpha	within coordinates
Tssr104786	transcription start site region 104786	1581 bp downstream
Tssr104787	transcription start site region 104787	1511 bp downstream
Tssr110587	transcription start site region 110587	366 bp downstream