rs219467010 SNP Detail

Summary

• ID
  rs219467010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30121509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGCTGG AGCGTAAAGC
  TGGGCCCTGA GAATTGATTC TGGACGTTGA AGAGGAGAGG CTGGGATCCT GGACTTCTGA
  GTCCTTGGGA GTGTTGGACA TCCTTGGGAG TTGGGGTGCA AGGACTGAGA GGCCTGATAC
  CGGGGGTTCT CTAAGAGGAC GAAGTGACCC GGACTCCTTC ACCCAAGGAG GGGCTGCATT
  R
  CATCCTTGAA ATTGCGGTTA TGGACGCAGG TTTGGGCCTC GAAGGTCGGG CGCTGGACCT
  CAGGAGTCCA CTCTGGTAGA GAGCAGCCCC GCCCTGGGAC TTCCCAGAGC ACCACTGGTG
  CAGGGTGCCC GGGCCGAACA GGAATTCCCC GTGCGCGGGG ATTCCACGGG CGCCGCGCTT
  CGCTGCGTGC CCCGCCTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906851	MGP_WTSI_7_31207103	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219467010					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906851	MGP_WTSI_7_31207103	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30121509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	1010 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	230 bp downstream
Rr400240	regulatory region 400240	48 bp upstream
Rr644813	regulatory region 644813	1740 bp distal
Rr644814	regulatory region 644814	342 bp distal
Rr644815	regulatory region 644815	within coordinates
Rr644816	regulatory region 644816	701 bp proximal
Tssr2184	transcription start site region 2184	1260 bp upstream
Tssr65714	transcription start site region 65714	342 bp downstream
Tssr65715	transcription start site region 65715	188 bp upstream
Tssr65716	transcription start site region 65716	305 bp upstream
Tssr65717	transcription start site region 65717	349 bp upstream
Tssr65718	transcription start site region 65718	377 bp upstream
Tssr65719	transcription start site region 65719	1182 bp upstream
Tssr65720	transcription start site region 65720	1221 bp upstream
Tssr65721	transcription start site region 65721	1278 bp upstream
Tssr65722	transcription start site region 65722	1297 bp upstream
Tssr65723	transcription start site region 65723	1328 bp upstream
Tssr65724	transcription start site region 65724	1344 bp upstream
Tssr65725	transcription start site region 65725	1516 bp upstream
Tssr65726	transcription start site region 65726	1523 bp upstream
Tssr65727	transcription start site region 65727	1541 bp upstream
Tssr65728	transcription start site region 65728	1836 bp upstream
Tssr71743	transcription start site region 71743	1722 bp upstream
Tssr71744	transcription start site region 71744	1711 bp upstream
Tssr71745	transcription start site region 71745	448 bp upstream