rs219467641 SNP Detail

Summary

• ID
  rs219467641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70686302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCACATGA AATAATCCCG
  TTTTTGTTTT TTATGTTAGG GATTCATGTA GACCTGACTG ACCTTGAACT CCTGATTTCC
  AGTCTCCAAA CAACCCCCTG GCTCATCAGT TGTTTTTGAG GCAGTGTCTG GTCTTGTAGC
  CCAGACTGGT ATCAAACTCG CAGCAATCCT TCTGCCTCTG CTTCTTGAGT GCACCACAAC
  R
  CCTGTTCTTT CTTTTGGCTG TTTTTATTCT GAAATATGGG CTGGCTACAT AGCCAAAGCC
  GGTCTAGAAC TCATCAATCC TTCTGTCTCC CTAAAGCAGT CATGACAGGT GCAGCAACCA
  CGCCCGCTCC ATCACTACTA CATGAACAGC AACACCAGCG TCCCCTGAAC CAGAGTCACA
  CTGTCTTGAA CCTCTTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375097596	MGP_WTSI_8_72757551	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs219467641					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375097596	MGP_WTSI_8_72757551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70686302 () rs orientation: forward

Symbol	Name	Function Class
Armc6	armadillo repeat containing 6	within coordinates
Cpgi20446	CpG island 20446	197 bp proximal
Rr400897	regulatory region 400897	702 bp upstream
Sugp2	SURP and G patch domain containing 2	536 bp upstream
Tssr77717	transcription start site region 77717	535 bp upstream
Tssr77718	transcription start site region 77718	880 bp upstream
Tssr77719	transcription start site region 77719	961 bp upstream
Tssr77720	transcription start site region 77720	989 bp upstream
Tssr81601	transcription start site region 81601	445 bp downstream
Tssr81602	transcription start site region 81602	749 bp downstream