rs219470366 SNP Detail

Summary

• ID
  rs219470366
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTGGGA ACTGCTCTCG
  CAACCCGAAT CTCAGCGTAG AACGAATGCC TCCCCTCACT TAGCTTACAA ACAAGGCCTC
  TCCAAAAATC ATGTCTTGGT GTGACGGCAG TTTTATTCTT ACGCATTTTC ACCGATGTGG
  GCGGTTAATA TAGGCTACCA AAGAAAAGTT TAGCCGGGCA TAGTGACACA CATTTTTAAT
  M
  TCAAGACTCG GAAAGCAGGC TCTGAGTTAC AGGCTAGCCG TTTGTTACAT AGTCGAGGGG
  CTTAATATCC ATCCATGTGG GGCCAAGAAG AGGCCAGGAG GGCTTTTCTT AAGTAGTCAC
  AAAGCTAGGT GACTAGTTGT GAATGATGTA GAGTCTTATA GTGCAGACTT GCCGTGTATT
  AAGGATGGTC TTGAACTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377499883	MGP_WTSI_9_48304187	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219470366					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377499883	MGP_WTSI_9_48304187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407382 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	within coordinates
Cpgi21716	CpG island 21716	62 bp distal
Gm5617	predicted gene 5617	110 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	783 bp upstream
Rr195326	regulatory region 195326	619 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	564 bp downstream
Tssr2862	transcription start site region 2862	184 bp upstream
Tssr84988	transcription start site region 84988	1025 bp downstream
Tssr84989	transcription start site region 84989	967 bp downstream
Tssr84990	transcription start site region 84990	862 bp downstream
Tssr84991	transcription start site region 84991	816 bp downstream
Tssr84992	transcription start site region 84992	682 bp downstream
Tssr84993	transcription start site region 84993	631 bp downstream
Tssr84994	transcription start site region 84994	172 bp downstream
Tssr89390	transcription start site region 89390	1674 bp upstream
Tssr89391	transcription start site region 89391	1655 bp upstream
Tssr89392	transcription start site region 89392	1625 bp upstream
Tssr89393	transcription start site region 89393	1093 bp upstream
Tssr89394	transcription start site region 89394	809 bp upstream
Tssr89395	transcription start site region 89395	764 bp upstream
Tssr89396	transcription start site region 89396	747 bp upstream