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rs219479669 SNP Detail
Summary
  • ID
    rs219479669
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr13:24244578 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACTTACTCT GTCTTCTGGG
    CGAACTCAGC CATGTTCACA CCTTTCCCTG CTTGATCATA AATTCTTCTC ATAGACCTTA
    CAATGCAAAG GAAATGCATG GCCCCCAGAA AGAAAGCCTT TCTCCGTGAC CTCATGTTAG
    TGGTACACTC CCACCTTCCA ATGTCTAAGC AAATCCAGGA GTTACTTTTG TGTCAGCTCC
    K
    GGATCTACCC AAATTAGCAC TCTGATGATG CCCTTCAGTG TGGCAAGCCT GGTGGAAAGT
    TTCATTTACC CACTGTGAGA AGCCATGAAT ATCTGGTACA CAAGAAATAT TTCAAGGATA
    AAGAAATGGG TCTAGCCTTT ACTTTGGAAC CAGAGTTTCT GACAATTCAT AACTATGTAA
    GACTTGACCA GCAAACAGTA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324294209 CHEV_13_24152464 CHEVERUD SCREENING_POP f SNP T G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs219479669 SNP T G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:24244578 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4933427I18Rik RIKEN cDNA 4933427I18 gene within coordinates
Carmil1 capping protein regulator and myosin 1 linker 1 within coordinates
Tssr121764 transcription start site region 121764 1282 bp upstream
Tssr121765 transcription start site region 121765 1271 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory