rs219480520 SNP Detail

Summary

• ID
  rs219480520
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135043138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATTGGAA ATAGAAAAAT
  ACTTTTGAGA TTTTGAGCAT CTCTTTTGTT GTTGTTTATT TGTTTTTGGT TTTCTCTGTA
  TAGCCCTGGC TGTCCTGGAC CTCACTCTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCT
  GCCTCCCAAG GGATTCTACT AGGCAGGGGC TCTACCACTG AGCCACGCCC CCAGCCTCTC
  M
  CTGGGGGATT CTAGGCAGAT GCTCTACCAT TGAGCCATAC CCCAGCCCAT AATATAGCAT
  TTTGTATAAG GGACTTGAGC ATCTCAGCAT CCTAAGATTG GATAATGGTA GAGAGGTTTT
  TGTTTTTTGT TTTTTGTTTT GTGTGGCCTT AGCTATCCTC TGTAGACCAG GTTGACCTTG
  AATTTAGAGG AAACTCTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824651	MGP_WTSI_5_135490154	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219480520					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824651	MGP_WTSI_5_135490154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135043138 () rs orientation: forward

Symbol	Name	Function Class
Abhd11os	abhydrolase domain containing 11, opposite strand	1496 bp upstream
Gm73578	predicted gene, 73578	882 bp upstream
Rr110217	regulatory region 110217	1338 bp distal
Rr110218	regulatory region 110218	338 bp distal
Rr110219	regulatory region 110219	663 bp proximal
Rr124504	regulatory region 124504	937 bp distal
Tssr1662	transcription start site region 1662	1547 bp upstream
Tssr1663	transcription start site region 1663	1114 bp upstream
Tssr1664	transcription start site region 1664	1080 bp upstream
Tssr53717	transcription start site region 53717	1523 bp upstream
Tssr53718	transcription start site region 53718	1476 bp upstream
Tssr53719	transcription start site region 53719	1461 bp upstream
Tssr53720	transcription start site region 53720	1416 bp upstream
Tssr53721	transcription start site region 53721	1159 bp upstream
Tssr53722	transcription start site region 53722	1126 bp upstream