rs219487489 SNP Detail

Summary

• ID
  rs219487489
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30511364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTTGT TTTTTTTCGA
  GGCAGAGTTT CTCTGTATAG CCCAGGCTGT CCTGGAACTC ACTTTTAGAC CAGGTTGGCC
  TCGAACACAG AAATCCTCCT GCCTCTGCCT CCCGAGTGCT GGGATCAAAG GCGTGCGCTA
  CCACGCCCGG CTCTATCTCT TTCTCTTAAT GTAACCCATA AACTAATGTG TATTTCTTCC
  K
  GGGCTTAAAA AACACTTGCC ACACTGAAGT TGATAGTTAC CATTATGTAT TATTAGAGTT
  ATCATAACCA AATATCCCAG AACACCAGTG CCTCCTTCAA AAGAAAAAGT TAGGCAGTAC
  TTTAAAAAAA ACCCCAAAAC ACCAGACTTT GTTCCCACAC AGGGTTTGGG AAGATGGAAT
  CTAAGACCAG AATGTGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367835028	MGP_WTSI_6_30461365	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219487489					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367835028	MGP_WTSI_6_30461365	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30511364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17257	CpG island 17257	1433 bp distal
Rr134712	regulatory region 134712	764 bp distal
Rr146079	regulatory region 146079	763 bp distal
Rr379134	regulatory region 379134	664 bp downstream
Ssmem1	serine-rich single-pass membrane protein 1	within coordinates
Tmem209	transmembrane protein 209	1578 bp upstream
Tssr55341	transcription start site region 55341	1517 bp downstream
Tssr55342	transcription start site region 55342	1476 bp downstream
Tssr55343	transcription start site region 55343	918 bp upstream
Tssr55344	transcription start site region 55344	929 bp upstream
Tssr55345	transcription start site region 55345	957 bp upstream
Tssr55346	transcription start site region 55346	975 bp upstream
Tssr60120	transcription start site region 60120	1632 bp upstream
Tssr60121	transcription start site region 60121	1608 bp upstream