rs219488043 SNP Detail

Summary

• ID
  rs219488043
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35905494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTAATCC CCGACGCCCT
  TCCAGGCCTC CCTCCAGCCT GAGACTTGAT GCTCTTTAGG GCTATTGTCC GGCCGAAAAA
  GGGACTTGGG GCGGCGCAGG GGGGTTGGGG GGTAGGGGTG GGGCGGCTGG TAGTTGGGTG
  GCCCTGTGAT CTGAGGTCGA TAGGCTGCTC GCAGTCTGTC CCCCTACTCT GGTGCCCTCC
  W
  TCGAGCTGCC TGAGATCGAG GACATAGTTA GGCCGACCAG AGGGTCCATT TGCTCGCTCC
  ATGACTGTTT TTCTTGAGTT CACTTAACTA ACTCTGGGGC AGCTAACTGC TCCCGAAAGG
  CCACCTTAAC TGGTCTAGAA AGTGGACTTG GAAGTCAGAG GTAAGAAAAT GCCACACCGG
  AGGGAGGAGG GGATTAAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400265244	MGP_WTSI_18_35932095	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219488043					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400265244	MGP_WTSI_18_35932095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35905494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	within coordinates
Gm16490	predicted gene 16490	1773 bp downstream
Rr393530	regulatory region 393530	196 bp downstream
Rr535947	regulatory region 535947	873 bp distal
Rr535948	regulatory region 535948	within coordinates
Tssr150551	transcription start site region 150551	1073 bp downstream
Tssr150552	transcription start site region 150552	954 bp downstream
Tssr150553	transcription start site region 150553	883 bp downstream
Tssr150554	transcription start site region 150554	842 bp downstream
Tssr150555	transcription start site region 150555	826 bp downstream
Tssr150556	transcription start site region 150556	770 bp downstream
Tssr150557	transcription start site region 150557	731 bp downstream
Tssr150558	transcription start site region 150558	700 bp downstream
Tssr150559	transcription start site region 150559	487 bp downstream
Tssr150560	transcription start site region 150560	310 bp downstream
Tssr150561	transcription start site region 150561	276 bp downstream
Tssr150562	transcription start site region 150562	1360 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates