rs219490045 SNP Detail

Summary

• ID
  rs219490045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGCATGCAC ACATGTTCCT ATCTGCATGT
  CTGCAGATAG GGGTGGCCTA TCTCCCATCA GACTAGGTCT TCTAAGGGTG CTGACAACAC
  GGTGAGGGCC TTCTAACTCC ACCATCAATC CCCAAGTTCT TACCCCGTCC TTGGGAATCA
  R
  TCTCTGGAGC AGAGCCAAGA AAGAACAGAT AAACAGTCAA GGCTCAGTGG GAAGGAGGAG
  AGTTTCTAGA GAGGACAGAG TTGGCTGCAG GGTTCCAAGG ACAACTAGTT GTAGCAAAGG
  GTGCTAACTG AGCAGTAGCT AGCAGACTGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730641	CHEV_11_69415443	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219490045					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492767 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	485 bp downstream
Rr450035	regulatory region 450035	1279 bp distal
Tssr3544	transcription start site region 3544	1237 bp upstream
Tssr102487	transcription start site region 102487	1901 bp downstream
Tssr102488	transcription start site region 102488	738 bp downstream
Tssr102489	transcription start site region 102489	692 bp downstream
Tssr108712	transcription start site region 108712	1923 bp upstream
Tssr108713	transcription start site region 108713	1772 bp upstream
Tssr108714	transcription start site region 108714	1704 bp upstream
Tssr108715	transcription start site region 108715	1670 bp upstream
Tssr108716	transcription start site region 108716	1366 bp upstream
Tssr108717	transcription start site region 108717	1352 bp upstream
Tssr108718	transcription start site region 108718	1288 bp upstream
Tssr108719	transcription start site region 108719	1286 bp upstream
Tssr108720	transcription start site region 108720	1270 bp upstream
Tssr108721	transcription start site region 108721	1261 bp upstream
Tssr108722	transcription start site region 108722	1183 bp upstream
Tssr108723	transcription start site region 108723	1146 bp upstream
Tssr108724	transcription start site region 108724	1100 bp upstream
Tssr108725	transcription start site region 108725	1078 bp upstream
Tssr108726	transcription start site region 108726	976 bp upstream
Tssr108727	transcription start site region 108727	955 bp upstream
Tssr108728	transcription start site region 108728	911 bp upstream
Tssr108729	transcription start site region 108729	826 bp upstream
Tssr108730	transcription start site region 108730	794 bp upstream
Tssr108731	transcription start site region 108731	752 bp upstream
Tssr108732	transcription start site region 108732	691 bp upstream
Tssr108733	transcription start site region 108733	511 bp downstream
Tssr108734	transcription start site region 108734	802 bp downstream
Tssr108735	transcription start site region 108735	869 bp downstream
Tssr108736	transcription start site region 108736	907 bp downstream
Tssr108737	transcription start site region 108737	1597 bp downstream