rs219492319 SNP Detail

Summary

• ID
  rs219492319
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70886731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAGGGTAT TAGAAAATAG GTACTCAGGT
  CCGCCGCCTG GCGTAGTTTT TAAAAAGCTT CTTTTGCCTT CCTGCAAACA ATCGATTCAA
  AACTTGGGCA TCCAACTAAA CCGACATCTA TGGGCAGAGG GAGAAAAAAA AAAAAAAAAA
  G
  GGAGAAACAA TGTACTTTAA AACTGTAGAT TTCAACTACC CACCGAAAAT GGTTCCATAG
  CAGGGGACTG AGTTCTTTCC TAAACTGAAA TTCTTTGTGT CTTTCAGGAG AGTACTAAAT
  TTAAGAATGT TTGGACAACT CATTCCAAGT                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320335137	CHEV_2_70894444	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219492319					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70886731 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			50 bp distal
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				Noncoding-Transcript-Variant
Mettl8	methyltransferase 8, methylcytidine			804 bp upstream
Rr397032	regulatory region 397032			573 bp downstream
Rr558662	regulatory region 558662			826 bp distal
Rr558663	regulatory region 558663			525 bp distal
Rr558664	regulatory region 558664			629 bp distal
Rr558665	regulatory region 558665			102 bp distal
Tssr18237	transcription start site region 18237			571 bp downstream
Tssr24467	transcription start site region 24467			874 bp upstream
Tssr24468	transcription start site region 24468			858 bp upstream
Tssr24469	transcription start site region 24469			776 bp upstream